syncAndCrunchhonors the locations defined in the INI when it copies data from the acquisition server to the local device. The default data directories are:
stitchedImages_100directory is created following stitching. The
averagesdirectory is created during processing. The main thing to get right is ensure there is a
rawDatadirectory and in this are the directories produced by the acquisition software.
syncAndCrunchwill do this.