# StitchIt

## StitchIt

- [StitchIt Documentation](https://stitchit.mouse.vision/readme.md): Stitching software for serial-section 2-photon
- [Installation](https://stitchit.mouse.vision/installation.md)
- [INI file configuration](https://stitchit.mouse.vision/installation/setting-up-the-ini-file.md)
- [Setting up syncAndCrunch](https://stitchit.mouse.vision/installation/setting-up-syncandcrunch.md)
- [syncAndCrunch walkthrough](https://stitchit.mouse.vision/new-users/syncandcrunch-walk-through.md)
- [How to...?](https://stitchit.mouse.vision/new-users/how-do-i.md)
- [Directory structure](https://stitchit.mouse.vision/new-users/the-experiment-directory-structure.md)
- [Common errors](https://stitchit.mouse.vision/faq/errors.md)
- [Stitching existing data](https://stitchit.mouse.vision/advanced-usage/stitching-existing-data.md)
- [Post-processing](https://stitchit.mouse.vision/advanced-usage/post-processing.md)
- [Seamless stitching](https://stitchit.mouse.vision/advanced-usage/setting-up-seamless-stitching.md)
- [Tools for tweaking stitching parameters](https://stitchit.mouse.vision/advanced-usage/tools-for-tweaking-stitching-parameters.md)
- [Useful StitchIt functions](https://stitchit.mouse.vision/advanced-usage/useful-tools.md)
- [Linux shell intro](https://stitchit.mouse.vision/further-reading/useful-linux-commands.md)
- [btrfs RAID](https://stitchit.mouse.vision/further-reading/btrfs_raid.md)
- [Working with tmux](https://stitchit.mouse.vision/further-reading/working-with-tmux.md)
- [How to contribute](https://stitchit.mouse.vision/developers/contributing-code-to-stitchit.md)
- [Developer notes](https://stitchit.mouse.vision/developers/developer-notes.md)